SNP Profiles of BE 2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	TT	TT	CC	CC	TT	CC	CT	AA	AA	TT	AG
1._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
2._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
3._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
4._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
5._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
6._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
7._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
8._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
9._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
10._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
11._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
12._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
13._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
14._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
15._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
16._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
17._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
18._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
19._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
20._BE_2	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
21._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
22._GC-01-047-3-02	CT	AG	CG	TT	TT	_	CC	TT	CC	CT	AA	AA	TT	AG
23._RUQ_1733	_	_	CG	_	_	_	_	TT	_	CT	_	AA	_	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CT	GG	GG	AA	TT	AA	CG	TT	CC	CC
1._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
2._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
3._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
4._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
5._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
6._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
7._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
8._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
9._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
10._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
11._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
12._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
13._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
14._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
15._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
16._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
17._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
18._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
19._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
20._BE_2	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
21._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
22._GC-01-047-3-02	CT	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC
23._RUQ_1733	_	_	_	_	_	GG	GG	AA	_	AA	CG	_	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	TT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
1._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
2._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
3._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
4._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
5._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
6._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
7._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
8._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
9._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
10._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
11._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
12._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
13._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
14._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
15._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
16._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
17._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
18._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
19._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
20._BE_2	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
21._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
22._GC-01-047-3-02	AA	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X
23._RUQ_1733	_	_	_	_	AA	_	_	_	_	CC	_	_	X_X	X_X

Input profile: BE_2

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 4

Dapeng Zhang, 2016

2._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

3._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

4._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

5._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

6._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 3

Dapeng Zhang, 2016

13._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 6

Dapeng Zhang, 2016

14._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 11

Dapeng Zhang, 2016

15._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 13

Dapeng Zhang, 2016

16._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 14

Dapeng Zhang, 2016

17._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302

Dapeng Zhang, 2016

18._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 12 > F

Dapeng Zhang, 2016

19._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 16 > F

Dapeng Zhang, 2016

20._BE_2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 8 > FP

Dapeng Zhang, 2016

21._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

22._BE_2 GC-01-047-3-02

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP4

23._BE_2 RUQ_1733

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25